Index

A

allowed_file() (in module virtualscanner.coms.coms_ui.coms_server_flask) anyrot() (in module virtualscanner.server.simulation.bloch.spingroup_ps)

apply_pulseq_commands() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods) apply_pulseq_old() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods) apply_rf() (SpinGroup method)

B

BrainwebPhantom (class in virtualscanner.server.simulation.bloch.phantom)

C

calc_SAR() (in module virtualscanner.server.rf.tx.SAR_calc.SAR_calc_main) circle_analysis() (in module virtualscanner.server.ana.ROI_analysis) combine_gradient_areas() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods) combine_gradients() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods)

combine_trap_grad_xyz() (in module virtualscanner.server.simulation.bloch.pulseq_library) consume() (in module virtualscanner.server.registration.register) create() (in module virtualscanner.server.registration.db_operations_mgr) create_payload() (in module virtualscanner.server.registration.utest_register)

D

delay() (SpinGroup method) df (SpinGroup attribute)

do_sw_sar() (in module virtualscanner.server.rf.tx.SAR_calc.SAR_calc_main) DTTPhantom (class in virtualscanner.server.simulation.bloch.phantom)

F

find_precessing_time() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods)

fov (Phantom attribute) fpwg() (SpinGroup method)

G

get_dB0_map() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods) get_list_inds() (Phantom method) get_list_locs() (Phantom method)

get_location() (Phantom method) get_m_signal() (SpinGroup method) get_params() (Phantom method) get_shape() (Phantom method)

I

insert() (in module virtualscanner.server.registration.db_operations_mgr)

L

launch_virtualscanner() (in module virtualscanner.coms.coms_ui.coms_server_flask) load_dataset_from_nifti() (in module virtualscanner.server.recon.drunck.nifti2npy)

loadQ() (in module virtualscanner.server.rf.tx.SAR_calc.SAR_calc_main) loc (SpinGroup attribute) log_in() (in module virtualscanner.coms.coms_ui.coms_server_flask)

M

m (SpinGroup attribute) main() (in module virtualscanner.server.ana.ROI_analysis) (in module virtualscanner.server.ana.T1_mapping) (in module virtualscanner.server.ana.T2_mapping) (in module virtualscanner.server.recon.drunck.nifti2npy) (in module virtualscanner.server.recon.drunck.reconstruct) make_oblique_gradients() (in module virtualscanner.server.simulation.bloch.pulseq_library) make_pulseq_epi_oblique() (in module virtualscanner.server.simulation.bloch.pulseq_library) make_pulseq_gre() (in module virtualscanner.server.simulation.bloch.pulseq_library) make_pulseq_gre_oblique() (in module virtualscanner.server.simulation.bloch.pulseq_library)

make_pulseq_irse() (in module virtualscanner.server.simulation.bloch.pulseq_library) make_pulseq_irse_oblique() (in module virtualscanner.server.simulation.bloch.pulseq_library) make_pulseq_se() (in module virtualscanner.server.simulation.bloch.pulseq_library) make_pulseq_se_oblique() (in module virtualscanner.server.simulation.bloch.pulseq_library) makeCylindricalPhantom() (in module virtualscanner.server.simulation.bloch.phantom) makePlanarPhantom() (in module virtualscanner.server.simulation.bloch.phantom) makeSphericalPhantom() (in module virtualscanner.server.simulation.bloch.phantom) modify_gradient() (in module virtualscanner.server.simulation.bloch.pulseq_library) MyTestCase (class in virtualscanner.server.ana.utest_ROI_analysis_T1_T2) (class in virtualscanner.server.ana.utest_T1_T2_mapping) (class in virtualscanner.server.recon.drunck.utest_reconstruct)

N

normalise_dataset() (in module virtualscanner.server.recon.drunck.nifti2npy)

O

on_acq() (in module virtualscanner.coms.coms_ui.coms_server_flask) on_analyze() (in module virtualscanner.coms.coms_ui.coms_server_flask) on_recon() (in module virtualscanner.coms.coms_ui.coms_server_flask)

on_register() (in module virtualscanner.coms.coms_ui.coms_server_flask) on_register_success() (in module virtualscanner.coms.coms_ui.coms_server_flask) on_rx() (in module virtualscanner.coms.coms_ui.coms_server_flask) on_tx() (in module virtualscanner.coms.coms_ui.coms_server_flask)

P

parse_enc() (in module virtualscanner.server.simulation.bloch.pulseq_library) payload_process() (in module virtualscanner.server.rf.tx.SAR_calc.SAR_calc_main)

PD (SpinGroup attribute) Phantom (class in virtualscanner.server.simulation.bloch.phantom) plot() (in module virtualscanner.server.recon.drunck.nifti2npy)

Q

query() (in module virtualscanner.server.registration.db_operations_mgr)

R

readout() (SpinGroup method) reuse() (in module virtualscanner.server.registration.register)

run_blochsim() (in module virtualscanner.server.simulation.bloch.caller_script_blochsim) run_Rx_sim() (in module virtualscanner.server.rf.rx.caller_script_Rx)

S

SARfromseq() (in module virtualscanner.server.rf.tx.SAR_calc.SAR_calc_main) SARinterp() (in module virtualscanner.server.rf.tx.SAR_calc.SAR_calc_main) SARlimscheck() (in module virtualscanner.server.rf.tx.SAR_calc.SAR_calc_main) save2disk() (in module virtualscanner.server.recon.drunck.nifti2npy) signal (SpinGroup attribute)

sim_single_spingroup() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods) sim_single_spingroup_old() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods) SpheresArrayPlanarPhantom (class in virtualscanner.server.simulation.bloch.phantom) SpinGroup (class in virtualscanner.server.simulation.bloch.spingroup_ps) store_pulseq_commands() (in module virtualscanner.server.simulation.bloch.pulseq_blochsim_methods)

T

T1 (SpinGroup attribute) T1_sig_eq() (in module virtualscanner.server.ana.T1_mapping) T2 (SpinGroup attribute) T2_sig_eq() (in module virtualscanner.server.ana.T2_mapping)

test_drunck_recon() (MyTestCase method) test_T1_mapping() (MyTestCase method) test_T1_ROI_analysis() (MyTestCase method) test_T2_mapping() (MyTestCase method) test_T2_ROI_analysis() (MyTestCase method)

U

undersample() (in module virtualscanner.server.recon.drunck.nifti2npy)

V

virtualscanner.coms.coms_ui.coms_server_flask (module) virtualscanner.coms.coms_ui.utest_coms_ui (module) virtualscanner.server.ana.ROI_analysis (module) virtualscanner.server.ana.T1_mapping (module) virtualscanner.server.ana.T2_mapping (module) virtualscanner.server.ana.utest_ROI_analysis_T1_T2 (module) virtualscanner.server.ana.utest_T1_T2_mapping (module) virtualscanner.server.recon.drunck.nifti2npy (module) virtualscanner.server.recon.drunck.reconstruct (module) virtualscanner.server.recon.drunck.utest_reconstruct (module) virtualscanner.server.registration.db_operations_mgr (module) virtualscanner.server.registration.register (module)

virtualscanner.server.registration.utest_register (module) virtualscanner.server.rf.rx.caller_script_Rx (module) virtualscanner.server.rf.tx.SAR_calc.SAR_calc_main (module) virtualscanner.server.rf.tx.SAR_calc.utest_SAR_calc (module) virtualscanner.server.simulation.bloch.caller_script_blochsim (module) virtualscanner.server.simulation.bloch.phantom (module) virtualscanner.server.simulation.bloch.pulseq_bloch_simulator (module) virtualscanner.server.simulation.bloch.pulseq_blochsim_methods (module) virtualscanner.server.simulation.bloch.pulseq_library (module) virtualscanner.server.simulation.bloch.spingroup_ps (module) virtualscanner.server.simulation.bloch.utest_bloch_pulseq (module) virtualscanner.server.simulation.bloch.utest_bloch_pulseq_epi (module) virtualscanner.utils.constants (module)

W

worker() (in module virtualscanner.coms.coms_ui.coms_server_flask)

X

Xs (Phantom attribute)

Y

Ys (Phantom attribute)

Z

Zs (Phantom attribute)